PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12207-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 309aa    MW: 33464.2 Da    PI: 8.8186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12207-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12118163454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + ErrRR+r+N++f++Lr llP+       K +Ka +L  ++eY+  L
  TRIUR3_12207-P1 118 HHVISERRRRERLNDSFQTLRALLPPG-----SKKDKANVLASTTEYMARL 163
                      58899********************95.....599************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-11116168No hitNo description
SuperFamilySSF474594.58E-16116184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15117181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDSVFALAAV PRALVLERAA ARVPGCLYLC LWAPVTAQLP SRCVPGWAYR EGRAYVELPE  60
PDLTASASLQ VQQQFYHRMM KACISLLASV HTATRNRTEL ATARHEGSSA PSTTSQLHHV  120
ISERRRRERL NDSFQTLRAL LPPGSKKDKA NVLASTTEYM ARLVSQVSQL REKNLQLEAR  180
LGLNQSPGFD PSGKTVEVEV TTGASTSTSA TPGQQSREVS VRVTVRAECD MSDLLTPLLA  240
RLKDAGCFAV LSVEARQQSS ALARASLTLR IAEAGDDAVD ATRLEEALAK VVEDAVTKTP  300
PPVPPPRSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616660.0AK361666.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560643.14e-80PREDICTED: putative transcription factor bHLH041
TrEMBLT1M4090.0T1M409_TRIUA; Uncharacterized protein
STRINGMLOC_65953.14e-99(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-21bHLH family protein