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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12207-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 33464.2 Da PI: 8.8186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 2e-12 | 118 | 163 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+r+N++f++Lr llP+ K +Ka +L ++eY+ L TRIUR3_12207-P1 118 HHVISERRRRERLNDSFQTLRALLPPG-----SKKDKANVLASTTEYMARL 163 58899********************95.....599************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.78E-11 | 116 | 168 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-16 | 116 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 117 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-10 | 119 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-12 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MDSVFALAAV PRALVLERAA ARVPGCLYLC LWAPVTAQLP SRCVPGWAYR EGRAYVELPE 60 PDLTASASLQ VQQQFYHRMM KACISLLASV HTATRNRTEL ATARHEGSSA PSTTSQLHHV 120 ISERRRRERL NDSFQTLRAL LPPGSKKDKA NVLASTTEYM ARLVSQVSQL REKNLQLEAR 180 LGLNQSPGFD PSGKTVEVEV TTGASTSTSA TPGQQSREVS VRVTVRAECD MSDLLTPLLA 240 RLKDAGCFAV LSVEARQQSS ALARASLTLR IAEAGDDAVD ATRLEEALAK VVEDAVTKTP 300 PPVPPPRSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361666 | 0.0 | AK361666.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146D10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560643.1 | 4e-80 | PREDICTED: putative transcription factor bHLH041 | ||||
TrEMBL | T1M409 | 0.0 | T1M409_TRIUA; Uncharacterized protein | ||||
STRING | MLOC_65953.1 | 4e-99 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3977 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 9e-21 | bHLH family protein |